diff --git a/src/core/FlowControl.js b/src/core/FlowControl.js
index f847ab25..cb63ce6c 100755
--- a/src/core/FlowControl.js
+++ b/src/core/FlowControl.js
@@ -52,14 +52,23 @@ const FlowControl = {
             output = "",
             progress = 0;
 
+        state.forkOffset += state.progress + 1;
+
         recipe.addOperations(subOpList);
+        const ingValues = subOpList.map(op => op.getIngValues());
 
         // Run recipe over each tranche
         for (i = 0; i < inputs.length; i++) {
             log.debug(`Entering tranche ${i + 1} of ${inputs.length}`);
+
+            // Baseline ing values for each tranche so that registers are reset
+            subOpList.forEach((op, i) => {
+                op.setIngValues(ingValues[i]);
+            });
+
             const dish = new Dish(inputs[i], inputType);
             try {
-                progress = await recipe.execute(dish, 0);
+                progress = await recipe.execute(dish, 0, state);
             } catch (err) {
                 if (!ignoreErrors) {
                     throw err;
@@ -117,7 +126,7 @@ const FlowControl = {
         if (!registers) return state;
 
         if (ENVIRONMENT_IS_WORKER()) {
-            self.setRegisters(state.progress, state.numRegisters, registers.slice(1));
+            self.setRegisters(state.forkOffset + state.progress, state.numRegisters, registers.slice(1));
         }
 
         /**
diff --git a/src/core/Recipe.js b/src/core/Recipe.js
index 877c0ac1..9305c32d 100755
--- a/src/core/Recipe.js
+++ b/src/core/Recipe.js
@@ -141,11 +141,14 @@ Recipe.prototype.lastOpIndex = function(startIndex) {
  *
  * @param {Dish} dish
  * @param {number} [startFrom=0] - The index of the Operation to start executing from
+ * @param {number} [forkState={}] - If this is a forked recipe, the state of the recipe up to this point
  * @returns {number} - The final progress through the recipe
  */
-Recipe.prototype.execute = async function(dish, startFrom) {
-    startFrom = startFrom || 0;
-    let op, input, output, numJumps = 0, numRegisters = 0;
+Recipe.prototype.execute = async function(dish, startFrom = 0, forkState = {}) {
+    let op, input, output,
+        numJumps = 0,
+        numRegisters = forkState.numRegisters || 0;
+
     log.debug(`[*] Executing recipe of ${this.opList.length} operations, starting at ${startFrom}`);
 
     for (let i = startFrom; i < this.opList.length; i++) {
@@ -171,7 +174,8 @@ Recipe.prototype.execute = async function(dish, startFrom) {
                     "dish":         dish,
                     "opList":       this.opList,
                     "numJumps":     numJumps,
-                    "numRegisters": numRegisters
+                    "numRegisters": numRegisters,
+                    "forkOffset":   forkState.forkOffset || 0
                 };
 
                 state = await op.run(state);
@@ -256,4 +260,5 @@ Recipe.prototype.generateHighlightList = function() {
     return highlights;
 };
 
+
 export default Recipe;